This page documents the requirements for access to a dataset stored on MCIN resources. Some are available for all to use with no restrictions, but most need the user to sign an agreement and/or be added to a list with the data originitator.

The ABCD Data Repository is a part of the National Institute of Mental Health Data Archive (NDA), a collection of repositories that also includes the RDoC Database (RDoCdb), the National Database for Clinical Trials related to Mental Illness (NDCT), the NIH Pediatric MRI Repository (PedsMRI), and the National Database for Autism Research (NDAR).

  Path : ace-lab-1.acelab.ca:/home/users/shared/abac
  Unix read-write group : abac

ABIDE is the Autism Brain Imaging Data Exchange from http://fcon_1000.projects.nitrc.org/indi/abide/abide_I.html

• License: Creative Commons, Attribution-NonCommercial-Share Alike License
• Path : ace-storage-2:/data1/Raw_Study_Data/abide
• Unix group(s) : abide
• No approval needed, just put in a GLPI ticket to be added to the group

ABIDE II is the Autism Brain Imaging Data Exchange from http://fcon_1000.projects.nitrc.org/indi/abide/abide_II.html

• License: Creative Commons, Attribution-NonCommercial-Share Alike License
• Path : ace-storage-2:/data1/Raw_Study_Data/ABIDE_II
• Unix group(s) : abide
• No approval needed, just put in a GLPI ticket to be added to the group

ADNI is the Alzheimer’s Disease Neuroimaging Initiative from http://adni.loni.usc.edu

• Agreement to sign: http://adni.loni.usc.edu/wp-content/uploads/how_to_apply/ADNI_Data_Use_Agreement.pdf
• Path : ace-storage-2:/data1/Raw_Study_Data/ADNI
• Unix read-only group : adni
• Approval : PJ Toussaint, Alan Evans

COBRE is the Center for Biomedical Research Excellence from http://cobre.mrn.org

• License : Creative Commons, Attribution-NonCommercial-Share Alike License
• Path : ace-storage-2:/data1/Raw_Study_Data/cobre
• Unix read-only group : cobre
• Approvals : No approval needed, permissions are 755

CONNECTOME comes from the Connectome Coordination Facility at https://www.humanconnectome.org

• License :
• Path : ace-storage-2:/data1/Raw_Study_Data/connectome
• Unix read-only group : connectome
• Approvals :

Consortium for Reliability and Reproducibility (CoRR) at http://fcon_1000.projects.nitrc.org/indi/CoRR/html/

CoRR includes 33 datasets, of which 32 are currently available for download, consisting of:

  1629 Subjects
  3357 Anatomical Scans
  5093 Resting Functional Scans
  1302 Diffusion Scans
  300 CBF and ASL Scans

• License : May vary by datasets and providers
• Path : ace-storage-2:/data1/Raw_Study_Data/corr
• Unix read-only group : corr
• Approvals : Reza Adalat

ICBM 152 Linear Linear ICBM Average Brain (ICBM152) Stereotaxic Registration Model

* https://www.mcgill.ca/bic/software/tools-data-analysis/anatomical-mri/atlases/icbm152lin

The MCIC Collection: A Shared Repository of Multi-Modal, Multi-Site Brain Image Data from a Clinical Investigation of Schizophrenia

• Path : ace-storage-2:/data1/Raw_Study_Data/mcic

* Single active user Joshua Morse joshua.morse@mail.mcgill.ca. * Originally downloaded by Jose Maria Chema Mateos. * Only using neuroimaging data so does not require a data usage agreement per:

http://fcon_1000.projects.nitrc.org/indi/enhanced/access.html

http://www.photon-ai.com/pac

• Path : ace-lab-1.acelab.ca:/home/users/
• Unix read-write group : pac

• License :
• Path : ace-storage-2:/data1/Raw_Study_Data/ICMB
• Unix read-only group : receptor_map
• Approvals : Reza Adalat

Data Inventory Entries could include:

• Heading
• Description
• Website
• License or link to license
• Path (Including server)
• Unix group https://contacts.acelab.ca/groups.php
• Permissions - Raw data should be read only in order prevent data loss or alteration, Raw data directories need to allow read and execute in order to allow users and programs to traverse the directory structure.

See the example below

Raw Study Data Example is an example of a data inventory entry. The description tells us a bit about the data, perhaps it's source and so on so that someone reading it gets the general idea of the kind of data it contains

• Path : ace-storage-2:/data1/Raw_Study_Data/Example
• Unix group : example_group
• permissions : 0550 (owner: read and execute, group: read and execute, other: no access