software_listing

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software_listing [2018/01/16 20:06] – csteelsoftware_listing [2024/03/26 13:52] (current) – external edit 127.0.0.1
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   * MATLAB Compiler Runtime R2015b (https://www.mathworks.com/products/compiler/mcr/)   * MATLAB Compiler Runtime R2015b (https://www.mathworks.com/products/compiler/mcr/)
   * Matlab based imaging tools   * Matlab based imaging tools
-    * brainstorm3 +    * brainstorm3[[https://github.com/brainstorm-tools/brainstorm3]] 
-    * eeglab +    * eeglab [[https://sccn.ucsd.edu/wiki/How_to_download_EEGLAB]] 
-    * fmristat +    * fmristat [[http://www.math.mcgill.ca/keith/fmristat/]] 
-    * surfstat +    * surfstat [[http://www.math.mcgill.ca/keith/surfstat/]] 
-    * niak +    * niak ( https://www.nitrc.org/projects/niak/ ) 
-    * spm12+    * spm8 [[http://www.fil.ion.ucl.ac.uk/spm/software/spm8/]] 
 +    * spm12 [[http://www.fil.ion.ucl.ac.uk/spm/software/spm12/]]
   * MINC 1 + 2   * MINC 1 + 2
   * Minc Tools / Display   * Minc Tools / Display
     * pymin     * pymin
   * MRICron tools (http://people.cas.sc.edu/rorden/mricron/install.html)   * MRICron tools (http://people.cas.sc.edu/rorden/mricron/install.html)
 +  * mri tutorials
   * Mrtrix3 (http://mrtrix.readthedocs.io/en/latest/installation/linux_install.html)   * Mrtrix3 (http://mrtrix.readthedocs.io/en/latest/installation/linux_install.html)
 +  * neurosynth [[https://pkgs.org/download/python-neurosynth]]
   * openmp   * openmp
-  * SPM+  * RMINC [[https://github.com/Mouse-Imaging-Centre/RMINC]] 
 +  * SPM [[https://en.wikibooks.org/wiki/SPM/Installation_on_64bit_Linux]] 
 +  * JEMRIS (http://www.jemris.org/)
  
 === Neurodebian Packages === === Neurodebian Packages ===
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 === Utilities === === Utilities ===
  
 +  * apticron
   * Anaconda, miniconda and conda   * Anaconda, miniconda and conda
   * FileZilla (https://filezilla-project.org/)   * FileZilla (https://filezilla-project.org/)
 +  * ethtool
   * GCC version to 4.8 if possible (https://gcc.gnu.org/gcc-4.8/)   * GCC version to 4.8 if possible (https://gcc.gnu.org/gcc-4.8/)
   * GIMP   * GIMP
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   * SublimeText   * SublimeText
   * SurfStat   * SurfStat
 +  * unattended-upgrades
   * Vim   * Vim
   * VirtualBox   * VirtualBox
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 * [[https://en.wikibooks.org/wiki/MINC]] * [[https://en.wikibooks.org/wiki/MINC]]
  
-- Minc viewers such as Display, Register, BrainView, ModelGui (Andrew Reid's)+- Minc viewers such as: 
 +  * Display 
 +  * Register 
 +  * BrainView [[https://github.com/sghanavati/brain-view2]] 
 +  * ModelGui (Andrew Reid's)
  
 === SGE === === SGE ===
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 * [[http://www.itksnap.org/pmwiki/pmwiki.php|itk-SNAP]] * [[http://www.itksnap.org/pmwiki/pmwiki.php|itk-SNAP]]
 +* [[http://www.itksnap.org/pmwiki/pmwiki.php?n=SourceCode.SourceCode]]
  
 === Human Connectome Project (HCP) connectome workbench === === Human Connectome Project (HCP) connectome workbench ===
  • software_listing.1516133219.txt.gz
  • Last modified: 2024/03/26 13:52
  • (external edit)